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Computational and Systems Biology Students

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Douglas Abrams
Junedh Amrute (MSTP in PhD training)

Multi Omic Atlas of Human Coronary Artery Disease
Zachary Beller (MSTP in PhD training)

Fiber prebiotics and microbiota ecology
Emily Benedict
Megan Burkhalter
Emily Butka

Predicting cell fate using single-cell state and lineage information
Marie Crane
Daniel Cui Zhou

Bulk and single-cell proteogenomic and spatial heterogeneity in cancer
Patrick DeSouza (MSTP in PhD training)

Dissecting the epigenetic mechanisms of TERT-dependent tumor initiation
Luke Diorio-Toth (MSTP in PhD training)

Mapping the evolutionary landscape of a novel family of tetracycline resistance enzymes
Ryan Friedman

Design Principles of Enhancers During Rod Photoreceptor Development
Paula Godoy

Identification and characterization of functional non-coding somatic variants in melanoma
Daniel Griffith
Mary Guo
Jeffrey Hansen (MSTP in PhD training)

A Test of the Pioneer Factor Hypothesis.
Steven Hartman
Ariel Hernandez-Leyva (MSTP in PhD training)

Impact of gut microbial metabolism on host breath volatiles.
Nicholas Jacobs

Exploring the Genetic Relationships Between Complex Diseases and how Differing Sources Predict Gene-Gene Interactions
Nick Jensen

I study zebrafish posture to assign health scores and predict recovery outcomes after spinal cord injury.
Hyeim Jung
Jennifer Karlow

Understanding the role of aberrant methylation in non-small cell lung cancer metastasis to brain
Alla Karpova
Wenjun Kong
Prashant Kumar Kuntala
Ji-Sun Kwon
Nicolette Laird

Uncovering tissue-specific aging patterns in C. elegans
Travis Law
Dylan Lawrence

Applying single-cell genomics to define microbial populations in the human gut
Chia-Jung Lee
Dian Li
Ling Liao
Clara Liu (MSTP in PhD training)

Understand the metastatic niche of colorectal cancer at single cell resolution
Kaiser Loell
Jeffrey Lotthammer
Juan Macias

Epistatic networks associated with parent-of-origin effects on metabolic traits
Colin McCornack (MSTP in PhD training)

Influence of glioblastoma substates and spatial expressional patterns on tumorgenicity
Artur Meller (MSTP in PhD training)

Modelling Myosin Hidden Structural States to Predict Drug Specificity and Disease Phenotypes
Mati Nemera

Dissecting neuronal cell-type-specific gene regulation by MeCP2
Borna Novak (MSTP in PhD training)

Understanding the structural changes that lead to NSP16 activation by using DiffNets.
Bridget Phillips
Isaac Plutzer
Xuan Qu (MSTP in PhD training)

Deciphering therapy-induced epigenetic landscapes using isogenic human models of glioblastoma
Aidan Schneider
James Shepherdson (MSTP in PhD training)

Deep mutational scanning of retinal transcription factors
Ethan Stancliffe
Erik Storrs
Nathan Wamsley
Julia Wang
Liang-Bo Wang

proteogenomic and spatial characterization of glioblastoma tumors at bulk and single cell level
Michael Ward

Development of Adaptive Sampling Algorithms
John Wildenthal (MSTP in PhD training)

Biofilm formation and composition in uropathogenic E. coli
Naomi Wilson

Exploring the immuno-modulatory role of the gut microbiota in asthma and designing polymicrobial communities to study metagenomic functions
Huiming Xia

Improving neoantigen prioritization methods for personalized cancer vaccines
Wenjin Zhang
Sidi Zhao

Understanding the biological and clinical significance of lncRNAs in cancer research
Siqi Zhao

stochastic gene expression