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Computational and Systems Biology Students

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Douglas Abrams
Junedh Amrute (MSTP in PhD training)

Single Cell Multi Omics in Human Coronary Artery Disease and Heart Failure
Emily Benedict
Maggie Bui (MSTP in PhD training)

CRISPR Screening to Improve Stem Cell-Derived Pancreatic Beta Cells
Emily Butka

Predicting cell fate using single-cell state and lineage information
Justin Chen
Marie Crane

Host-microbiome interaction in childhood undernutrition and during dietary intervention
Patrick DeSouza (MSTP in PhD training)

Genetic determinants of epigenetic fitness during tumor initiation
Luke Diorio-Toth (MSTP in PhD training)

Mapping the evolutionary landscape of a novel family of tetracycline resistance enzymes
Ryan Friedman

Design Principles of Enhancers During Rod Photoreceptor Development
Paula Godoy

Identification and characterization of functional non-coding somatic variants in melanoma
Daniel Griffith

Understanding the relationship between intrinsically disordered protein sequence and function.
Juanru Guo
Lindsey Hall
Steven Hartman

Mechanistic studies of the functional effects of microbiota-directed foods on bacterial strains present in the microbial communities of malnourished children and how they impact host physiology
Ariel Hernandez-Leyva (MSTP in PhD training)

Impact of gut microbial metabolism on host breath volatiles.
My Hoang

genomic and epigenomic alterations underlying chemo-resistance in small cell lung cancer, neoantigen prediction
Nicholas Jacobs

Exploring the Genetic Relationships Between Complex Diseases and how Differing Sources Predict Gene-Gene Interactions
Nick Jensen

I study zebrafish posture to assign health scores and predict recovery outcomes after spinal cord injury.
Hyeim Jung

Integration of multi-omics approaches to study early stages of whipworm infection
Alla Karpova
Prashant Kumar Kuntala
Ji-Sun Kwon
Travis Law
Chia-Jung Lee
Evan Lee (MSTP in PhD training)

Prevotella copri mediated microbial community and host metabolic shifts
Dian Li
Ling Liao
Clara Liu (MSTP in PhD training)

Understand the metastatic niche of colorectal cancer at single cell resolution
Kaiser Loell
Jeffrey Lotthammer
Colin McCornack (MSTP in PhD training)

Influence of glioblastoma substates and spatial expressional patterns on tumorgenicity
Artur Meller (MSTP in PhD training)

Modelling Myosin Hidden Structural States to Predict Drug Specificity and Disease Phenotypes
Mati Nemera

Dissecting neuronal cell-type-specific gene regulation by MeCP2
Borna Novak (MSTP in PhD training)

Understanding the structural changes that lead to NSP16 activation by using DiffNets.
Bridget Phillips
Isaac Plutzer
Xuan Qu (MSTP in PhD training)

Regulation of transposable elements in cancer
Aidan Schneider
James Shepherdson (MSTP in PhD training)

Deep mutational scanning of retinal transcription factors
Ethan Stancliffe

My research focuses on computational methods for the analysis and processing of untargeted metabolomics data.
Erik Storrs
Nathan Wamsley
Julia Wang
John Wildenthal (MSTP in PhD training)

Metabolomic analysis of surgical site infections
Naomi Wilson

Exploring the immuno-modulatory role of the gut microbiota in asthma and designing polymicrobial communities to study metagenomic functions
Huiming Xia

Improving neoantigen prioritization methods for personalized cancer vaccines
Qian Zhang
Wenjin Zhang
Sidi Zhao

Understanding the biological and clinical significance of lncRNAs in cancer research